sequence alignment in a sentence
1) RNA secondary structure prediction from a multiple sequence alignment .
alignment collocations
2) Multiple sequence alignments can be used to create a phylogenetic tree.
3) A structure-based sequence alignment is given in Fig.2.
sequence alignment example sentences
4) However, the biological relevance of sequence alignments is not always clear.5) In genetics, sequence alignment is an important application where dynamic programming is essential.
6) A variety of computational algorithms have been applied to the sequence alignment problem.
7) A variant of this sequence alignment is used in the sequencing process itself.
8) ClustalW2 - general purpose multiple sequence alignment program for DNA or proteins.
9) Current methods to determine divergence times use DNA sequence alignments and molecular clocks.
10) Strap: A tool for multiple sequence alignment and sequence based structure alignment.
11) Thus, sequence alignment is done over segments rather than over the entire protein.
12) Multiple sequence alignment also refers to the process of aligning such a sequence set.
13) This sequence alignment method is often used in the context of hidden Markov models.
14) PhyloGibbs runs on arbitrary collections of multiple local sequence alignments of orthologous sequences.
15) FIG. 2 sequence alignment of rat CD2 and human CD4.
example sentences with sequence alignment
16) This database includes multiple sequence alignments of all GPCR families and sub-families.17) Methods of statistical significance estimation for gapped sequence alignments are available in the literature.
18) Extracting information from multiple sequence alignments .
19) alignments determined using the ClustalW2 multiple sequence alignment program available online at EMBL-EBI .
20) Both fields had developed combinations of sequence alignment operations to facilitate the comparison of whole sequences.
21) A more recent paper shows how these interdependencies can be located within multiple sequence alignments .
22) Sequence self-comparison programs use databases such as AB-BLAST to conduct an initial sequence alignment .
23) The realigned subsets are then themselves aligned to produce the next iteration's multiple sequence alignment .
24) More complete details and software packages can be found in the main article multiple sequence alignment .
25) There free available programs for visualization of multiple sequence alignments : JalView, UGENE.
26) T-coffee - multiple sequence alignment .
27) They are frequently used as the basis for progressive and iterative types of multiple sequence alignments .
28) These techniques , especially multiple sequence alignment , are used in studying phylogenetic relationships and protein function.
How to use sequence alignment in a sentence
29) However, defining homology can be challenging due to the inherent difficulties of multiple sequence alignment .30) This module contains several classes and methods that allow users to perform pairwise and multiple sequence alignment .
31) The situation improves somewhat when the amino acid variation in multiple sequence alignments is taken into account.
32) Phylogenetics and sequence alignment are closely related fields due to the shared necessity of evaluating sequence relatedness.
33) The sequence alignment and template structure are then used to produce a structural model of the target.
34) Andrew Abbott argued that sequence alignment methods in biology and information theory and computer science provided useful models.
35) In bioinformatics, PAM matrices are regularly used as substitution matrices to score sequence alignments for proteins.
36) Business and marketing research has also applied multiple sequence alignment techniques in analyzing series of purchases over time.
37) The quality of the homology model is dependent on the quality of the sequence alignment and template structure.
38) Multiple sequence alignment is an extension of pairwise alignment to incorporate more than two sequences at a time.
39) Multiple sequence alignment An exercise on how to produce multiple sequence alignments for a group of related proteins.
40) Multiple sequence alignment An exercise on how to produce multiple sequence alignments for a group of related proteins.
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